Microsoft Word - Anashkinaetal_BIOINF-2017-0931_supplement_revised_for_online_publication.docx

Prediction of protein-ligand interaction is essential for many areas of basic and applied research when there is no experimentally determined structure of the complex. In this study we extend our approach to protein-protein interaction prediction based on the principle of concurrently employing several docking servers by developing the QASDOM meta-server (Quality ASsessment of DOcking Models) for scoring a dataset of docking models created using a range of servers and user-specific techniques, and selecting the most representative models in this dataset.